Providing bioinformatics services for the genomics leadersBioinformatics Services

We offer a full suite of bioinformatics services for your specific genomic needs. Our bioinformatic specialists and engineers have the expertise and experience working with the top companies in the genomics space.

Tailored Algorithm Development

Algorithm Development:

Our bioinformatics team is trained in multiple programming languages and has experience in developing algorithms from metagenomic to human genomics. From simple questions of sequencing performance to more complex problems of biomarker discovery, our team’s expertise can provide the answers you are searching for.

Bioinformatics Pipeline Development

We use in-house or preferred third-party tools and platforms to create a pipeline suitable to client needs. SMEDIX can help with everything from demultiplexing your data through final analysis, including software development, verification and validation of the pipeline, and software documentation of your products for IVD submission.

Genomic Analysis and Data Visualization

We understand analysis and interpretation of genomic data can be more difficult than generating and managing the data. Visualization of this data is equally important to ensure ease of interpretation and presentation. Our Bioinformatics team can help.

  • Base Calling
  • ChIP-Seq Analysis
  • Comparative Genome Analysis
  • Custom scripting and special projects
  • Differential Gene Expression Analysis
  • Exome Analysis
  • Metagenomic Analysis
  • Methylation Analysis
  • Read Filtering and Cleaning
  • SNV / Indel Calling
  • SNV / CNV Discovery
  • Transcriptome Annotation
  • Transcriptome de novo Assembly
  • Variant Annotation
  • Whole Genome de novo Assembly
  • Small RNA Annotation

Bioinformatics Software V&V

At SMEDIX, we are proud to adhere to IEC 62304 compliant and FDA compliant software development and verification & validation processes. Projects ranging from a component of the software to the whole pipeline, our bioinformatics verification & validation team will execute on your needs. With years of experience in risk analysis, requirements engineering, unit testing, integration testing, and ad-hoc testing, we can ensure your software will be of the highest quality and well documented for your Engineering and QA/RA departments.

Bioinformatics Pipeline Overview

DNA Sequencing Analysis

ChIP-Seq Analysis

RNA Sequencing Analysis

Data Visualization & Project Plan Generation

Bioinformatics V&V Strategy

Please contact us for more information.